I’m ultimately trying to install the RJDBC package on a mac running R 3.3.3 and Java 12 and Mojave OS.
When trying to install RDJBC I get the following error:
configure: error: One or more Java configuration variables are not set. Make sure R is configured with full Java support (including JDK). Run R CMD javareconf as root to add Java support to R. If you don't have root privileges, run R CMD javareconf -e to set all Java-related variables and then install rJava.
So then I go ahead and run R CMD javareconf in the terminal and I get the following error:
conftest.c:1:10: fatal error: 'jni.h' file not found
I’ve found various questions online around the same topic and have tried out suggested solutions and none have worked for me. Ity could be a combination of my OS/Java version. Would someone be willing to walk me through a fix here?
WARNING: Initial Java 12 release has broken JNI support and does NOT work. Use stable Java 11 (or watch for 12u if avaiable). ERROR: Java exception occurred during rJava bootstrap - see stderr for Java stack trace. Exception in thread "main" java.lang.NullPointerException at java.base/jdk.internal.reflect.Reflection.verifyMemberAccess(Reflection.java:130) at java.base/java.lang.reflect.AccessibleObject.slowVerifyAccess(AccessibleObject.java:673) at java.base/java.lang.reflect.AccessibleObject.verifyAccess(AccessibleObject.java:666) at java.base/java.lang.reflect.AccessibleObject.checkAccess(AccessibleObject.java:638) at java.base/java.lang.reflect.Field.checkAccess(Field.java:1075) at java.base/java.lang.reflect.Field.get(Field.java:416) Error in .jcheck(silent = FALSE) : java.lang.NullPointerException.jcall(f, "Ljava/lang/Object;", "get", .jcast(ic, "java/lang/Object"))new("jobjRef", jobj = <pointer: 0x7fd4a04ac4b8>, jclass = "java/lang/NullPointerException")
Interestingly, it seems to work when I run R through terminal, but not in Rstudio.